<?xml version="1.0" encoding="UTF-8"?>
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
  <url><loc>https://biotorch.chrishayduk.com/</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/alphafold2</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/alphafold3</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/chemprop</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/deepsea</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/diffdock</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/enformer</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/esm2</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/esm3</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/esmfold</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/esmfold2</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/evo1</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/geneformer</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/nequip</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/proteinmpnn</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/rfdiffusion</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/scvi</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/models/spliceai</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/adaptive_layer_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af2_local_frame_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af2_recycling_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af2_template_pair_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_adaptive_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_atom_attention_decoder</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_atom_attention_encoder</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_noisy_atom_pair_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_polymer_clash</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_ranking_score</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_recycling_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_reference_atom_pair_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_relative_position_buckets</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_template_pair_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/af3_trunk_atom_pair_conditioning</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/affine_linear_projection</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/affine_projection</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/aligned_ensemble_predictions</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/allele_window_edit</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/ambiguous_atom_renaming</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/atom_layout_gather</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/atom_layout_gather_and_pool</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/atom_token_broadcast_and_pool</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/attention_contact_prediction</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/batch_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/batched_neighbor_graph</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/bayesian_differential_expression</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/bessel_radial_basis</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/between_residue_clash</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/bidirectional_chain_pair_tm_scores</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/binary_cross_entropy_with_logits</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/categorical_cross_entropy</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/categorical_feature_encoding</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/causal_depthwise_convolution</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/chain_relative_position_buckets</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/clean_template_recycling</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/clebsch_gordan_tensor_product</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/conditioned_rms_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/conditioned_transformer_block</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/constrained_categorical_sampling</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/ddpm_posterior</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/deepsea_variant_effects</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/delete_gene_tokens</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/diagonal_gaussian_vae_terms</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/diagonal_state_space_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/diffusion_score_matching_loss</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/dilated_conv1d</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/directed_bond_graph</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/directed_bond_torsion_rotation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/directed_chain_pair_tm_scores</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/distogram_gelu_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/distogram_linear_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/dna_reverse_complement</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/edm_preconditioning</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/edm_sampler_step</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/egnn_coordinate_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/embedding_perturbation_comparison</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/equivariant_batch_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/equivariant_gated_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/equivariant_message_passing</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esm2_token_dropout</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esm3_single_to_pair</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esmfold2_atom_attention_decoder</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esmfold2_atom_attention_encoder</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esmfold2_relative_position_buckets</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esmfold2_single_to_pair</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esmfold_recycling_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esmfold_relative_position_buckets</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/esmfold_single_to_pair</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/expression_masks_and_masked_objectives</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/feedforward_block</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/fft_causal_long_convolution</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/flow_matching_loss</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/forces_from_energy</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/fourier_noise_embedding</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/frame_aligned_point_error</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gated_feedforward</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gated_feedforward_block</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gaussian_forward</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gaussian_noising_and_score</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gelu_activation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gelu_sigmoid_approximation_activation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gelu_tanh_approximation_activation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gene_token_intervention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/genomic_relative_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/geometric_reasoning_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/geometric_score_readouts</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/gvp_scalar_vector</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/hyena_operator</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/indel_prediction_alignment</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/interface_plddt_summary</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/interface_tm_score</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/invariant_point_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/iterative_masked_token_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/kv_cache_attention_step</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/layer_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/layer_rms_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/lddt</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/learned_layer_mixture</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/library_size_dispersion_decoder</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/lie_euler</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/local_frame_from_three_points</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_centered_noise</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_frame_point_error</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_layer_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_lm_head_loss</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_log_softmax</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_logsumexp</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_mean</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_poisson_deviance</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_reductions</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_softmax</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/masked_sum</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/modal_filter_recurrence</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/msa_column_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/msa_column_global_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/msa_pair_weighted_averaging</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/msa_profile_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/msa_row_pair_bias</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/multihead_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/multitrack_embedding_fusion</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/nearest_codebook_quantization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/negative_binomial_log_prob</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/node_edge_message_passing</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/nonbacktracking_bond_messages</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/outer_product_mean</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/pae_gelu_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/pae_linear_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/pairwise_distance_encodings</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/pde_gelu_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/pde_linear_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/peptide_geometry_violation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/periodic_radius_graph</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/permuted_autoregressive_mask</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/plddt_confidence_summary</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/plddt_gelu_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/plddt_linear_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/plddt_linear_stack_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/plddt_normalized_linear_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/plddt_relu_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/points_in_local_frames</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/pose_reverse_diffusion_step</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/posterior_predictive_moments</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/predicted_tm_score</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/projected_layer_mixture</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/promote_gene_tokens</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/protein_backbone_edge_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/proteinmpnn_decoder</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/quaternion_frame_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/radial_basis_cutoff</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/radius_neighbor_graph</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rank_value_tokenization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/real_spherical_harmonics</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/recycling_state_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/relative_accessible_surface_area</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/relative_position_buckets</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/relu_activation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/resolved_atom_head</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/resolved_atom_head_normalized</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rfdiffusion_full_graph</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rfdiffusion_global_frame_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rfdiffusion_refinement_graph</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rfdiffusion_rotation_step</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rfdiffusion_template_pair_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rigid_coordinate_augmentation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rigid_permutation_alignment</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rigid_transform_operations</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rms_normalization</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rosettafold_pair_block</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/rotary_position_embedding</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/row_attention_pooling</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/safe_vector_ops</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/se3_equivariant_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/segment_sum_mean</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/sequence_weighted_msa_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/silu_activation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/single_to_pair_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/so3_exp_log</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/so3_geodesic</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/so3_heat_kernel_score</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/softmax_attention_pooling</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/spatial_rotary_embedding</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/splice_variant_effects</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/stable_classification_loss</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/stable_masked_softmax</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/structural_violation_loss</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/structure_confidence_readouts</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/structure_confidence_targets</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/symmetry_permutation_alignment</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/template_pair_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/template_pair_cross_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/template_pair_features</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/template_pair_mean</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/tied_axial_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/tied_pair_column_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/tied_pair_row_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/tm_ranking_score</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/token_embedding_lookup</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/torsion_frame_reconstruction</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/triangle_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/triangle_multiplicative_update</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/variant_effect_scoring</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/vp_forward_noising</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/weighted_kabsch_alignment</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/weighted_layer_mixture</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/weighted_masked_mean</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/window_attention_pooling</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/windowed_atom_attention</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/windowed_max_pool</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/within_residue_violation</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/wrapped_torsion_diffusion</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/problems/zero_inflated_negative_binomial_log_prob</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/sponsors</loc></url>
  <url><loc>https://biotorch.chrishayduk.com/privacy</loc></url>
</urlset>
